RNN (LSTM) for automated Brainbow Tracing

A Recurrent Neural Network Approach for Automated Neural Tracing in Multispectral 3D Images

Yan Y, Roossien DH, Sadis BV, Corso JJ, Cai D    bioRxiv doi.org/


Keras Code

Training subset

Testing subset

RNN (LSTM) is implemented with the deep learning toolbox ‘Keras’

DIADEM metric is calculated following:

The DIADEM metric: Comparing multiple reconstructions of the same neuron

Gillette TA, Brown KM, Ascoli GA       Neuroinformatics 2011;9:233–245